seamm_util

• seamm_util package
  • Submodules
  • seamm_util.argument_parser module
    • ArgumentParser
      • ArgumentParser.add_argument()
      • ArgumentParser.add_argument_group()
      • ArgumentParser.add_parser()
      • ArgumentParser.exists()
      • ArgumentParser.format_help()
      • ArgumentParser.get()
      • ArgumentParser.get_ini_files()
      • ArgumentParser.get_options()
      • ArgumentParser.get_origins()
      • ArgumentParser.items()
      • ArgumentParser.optionxform()
      • ArgumentParser.parse_args()
      • ArgumentParser.print_help()
      • ArgumentParser.split_args()
    • getParser()
    • seamm_parser()
  • seamm_util.check_executable module
    • check_executable()
  • seamm_util.compact_json_encoder module
    • CompactJSONEncoder
      • CompactJSONEncoder.CONTAINER_TYPES
      • CompactJSONEncoder.MAX_ITEMS
      • CompactJSONEncoder.MAX_WIDTH
      • CompactJSONEncoder.encode()
      • CompactJSONEncoder.indent_str
      • CompactJSONEncoder.iterencode()
  • seamm_util.dictionary module
    • Dictionary
      • Dictionary.copy()
      • Dictionary.fromkeys()
  • seamm_util.elemental_data module
  • seamm_util.include_open module
    • Open
      • Open.depth
      • Open.filename
      • Open.lineno
      • Open.path
      • Open.push()
      • Open.stack()
      • Open.total_lines
    • splitext()
  • seamm_util.md_statistics module
    • analyze_autocorrelation()
    • ar1()
  • seamm_util.output module
    • Output
      • Output.copy()
      • Output.filename
  • seamm_util.plotting module
    • Axis
      • Axis.to_dict()
    • Figure
      • Figure.add_plot()
      • Figure.dump()
      • Figure.dumps()
      • Figure.get_plot()
      • Figure.grid_plots()
      • Figure.template
    • Plot
      • Plot.add_axis()
      • Plot.add_trace()
      • Plot.axes
    • Trace
      • Trace.to_dict()
  • seamm_util.printing module
    • FormattedText
    • Manager
      • Manager.getPrinter()
    • PlaceHolder
      • PlaceHolder.append()
    • Printer
      • Printer.addHandler()
      • Printer.callHandlers()
      • Printer.disabled
      • Printer.findCaller()
      • Printer.getEffectiveLevel()
      • Printer.handle()
      • Printer.handlers
      • Printer.important()
      • Printer.isEnabledFor()
      • Printer.job()
      • Printer.level
      • Printer.makeRecord()
      • Printer.manager
      • Printer.name
      • Printer.normal()
      • Printer.parent
      • Printer.print()
      • Printer.print_root
      • Printer.propagate
      • Printer.removeHandler()
      • Printer.setLevel()
      • Printer.terse()
      • Printer.verbose()
    • RootPrinter
    • addLevelName()
    • basicConfig()
    • disable()
    • fileConfig()
    • getLevelName()
    • getPrinter()
    • important()
    • job()
    • normal()
    • setPrinterClass()
    • shutdown()
    • terse()
    • verbose()
  • seamm_util.seamm_file module
    • File
      • File.read_header()
  • seamm_util.seamm_json module
    • JSONDecoder
      • JSONDecoder.dict_to_object()
    • JSONEncoder
      • JSONEncoder.default()
  • seamm_util.seamm_util module
  • seamm_util.units module
    • default_units()
  • seamm_util.variable_names module
    • clean()
    • is_valid()
    • iskeyword()
  • seamm_util.water_models module
    • SPC
      • SPC.atom_types()
    • SPC_E
      • SPC_E.atom_types()
      • SPC_E.reference()
    • TIP3P
      • TIP3P.atom_types()
    • Water
      • Water.coordinates()
      • Water.create_model()
      • Water.find_waters()
      • Water.mass
      • Water.pdb()
      • Water.system()
  • seamm_util.zenodo module
    • Record
      • Record.data
      • Record.token
      • Record.metadata
      • Record.add_creator()
      • Record.add_file()
      • Record.add_keyword()
      • Record.authors
      • Record.conceptdoi
      • Record.creators
      • Record.description
      • Record.doi
      • Record.download_file()
      • Record.files()
      • Record.get_file()
      • Record.in_progress
      • Record.keywords
      • Record.publish()
      • Record.remove_file()
      • Record.remove_keyword()
      • Record.submitted
      • Record.title
      • Record.update_metadata()
      • Record.upload_type
    • Zenodo
      • Zenodo.add_version()
      • Zenodo.create_record()
      • Zenodo.get_deposit_record()
      • Zenodo.get_record()
      • Zenodo.search()
      • Zenodo.token
  • Module contents