Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | V | W A as_tensor() (in module seamm_mbe.units) assemble() (in module seamm_mbe.assemble) assign_levels() (in module seamm_mbe.levels) atomic_number() (in module seamm_mbe.elements) atoms (seamm_mbe.fragments.Fragment attribute) (seamm_mbe.system.Molecule attribute) B breakdown (seamm_mbe.assemble.Labels attribute) by_order() (seamm_mbe.fragments.FragmentSet method) C calculations() (seamm_mbe.fragments.FragmentSet method) canonical_key() (in module seamm_mbe.fragments) CATALOG (in module seamm_mbe.catalog) CellTerm (class in seamm_mbe.assemble) charge (seamm_mbe.catalog.MoleculeType attribute) (seamm_mbe.fragments.Fragment attribute) check() (seamm_mbe.selection.SelectionRules method) closure() (seamm_mbe.fragments.FragmentSet method) coordinates (seamm_mbe.fragments.Fragment attribute) (seamm_mbe.system.Molecule attribute) Correction (class in seamm_mbe.algebra) counts() (seamm_mbe.fragments.FragmentSet method) CRITERIA (in module seamm_mbe.selection) criterion (seamm_mbe.selection.SelectionRules attribute) cutoff() (seamm_mbe.selection.SelectionRules method) cutoffs (seamm_mbe.selection.SelectionRules attribute) D define_type() (in module seamm_mbe.catalog) designated (seamm_mbe.catalog.MoleculeType attribute) (seamm_mbe.system.Molecule attribute) dftd4_virial_to_virial() (in module seamm_mbe.units) distances (seamm_mbe.fragments.Fragment attribute) E energy (seamm_mbe.algebra.Correction attribute) (seamm_mbe.algebra.FragmentResult attribute) (seamm_mbe.algebra.Increment attribute) (seamm_mbe.assemble.CellTerm attribute) (seamm_mbe.assemble.Labels attribute) energy_offset() (in module seamm_mbe.assemble) enumerate_fragments() (in module seamm_mbe.fragments) EV_PER_A3_TO_ATM (in module seamm_mbe.units) EV_PER_A3_TO_GPA (in module seamm_mbe.units) EV_TO_KJ_PER_MOL (in module seamm_mbe.units) ev_to_kj_per_mol() (in module seamm_mbe.units) F forces (seamm_mbe.algebra.Correction attribute) (seamm_mbe.algebra.FragmentResult attribute) (seamm_mbe.algebra.Increment attribute) (seamm_mbe.assemble.CellTerm attribute) (seamm_mbe.assemble.Labels attribute) forces_to_gradients() (in module seamm_mbe.units) formula (seamm_mbe.catalog.MoleculeType attribute) formula() (seamm_mbe.system.System method) Fragment (class in seamm_mbe.fragments) FragmentResult (class in seamm_mbe.algebra) FragmentSet (class in seamm_mbe.fragments) from_analyze_task() (in module seamm_mbe.units) from_configuration() (seamm_mbe.system.System class method) G gradients_to_forces() (in module seamm_mbe.units) H hill_formula() (in module seamm_mbe.elements) I images (seamm_mbe.fragments.Fragment attribute) in_sum (seamm_mbe.fragments.Fragment attribute) Increment (class in seamm_mbe.algebra) increments (seamm_mbe.algebra.Correction attribute) increments() (in module seamm_mbe.algebra) index (seamm_mbe.system.Molecule attribute) intramolecular_virial() (in module seamm_mbe.assemble) IONIC_ELEMENTS (in module seamm_mbe.elements) K KBAR_TO_EV_PER_A3 (in module seamm_mbe.units) key (seamm_mbe.fragments.Fragment attribute) kj_per_mol_to_ev() (in module seamm_mbe.units) L label (seamm_mbe.assemble.CellTerm attribute) Labels (class in seamm_mbe.assemble) level (seamm_mbe.algebra.Increment attribute) (seamm_mbe.fragments.Fragment attribute) M mass() (in module seamm_mbe.elements) masses (seamm_mbe.system.System property) max_distance (seamm_mbe.fragments.Fragment property) max_increment_net_force (seamm_mbe.algebra.Correction attribute) (seamm_mbe.assemble.Labels attribute) max_order (seamm_mbe.selection.SelectionRules attribute) mbe_correction() (in module seamm_mbe.algebra) minimum_image() (seamm_mbe.system.System method) missing_results() (in module seamm_mbe.algebra) MissingFragmentsError module seamm_mbe seamm_mbe.algebra seamm_mbe.assemble seamm_mbe.catalog seamm_mbe.elements seamm_mbe.fragments seamm_mbe.levels seamm_mbe.selection seamm_mbe.system seamm_mbe.units molecular_pressure (seamm_mbe.assemble.Labels attribute) Molecule (class in seamm_mbe.system) molecules (seamm_mbe.fragments.Fragment attribute) MoleculeType (class in seamm_mbe.catalog) MONATOMIC (in module seamm_mbe.elements) multiplicities (seamm_mbe.fragments.Fragment attribute) multiplicity (seamm_mbe.catalog.MoleculeType attribute) (seamm_mbe.fragments.Fragment property) N n_atoms (seamm_mbe.fragments.Fragment property) name (seamm_mbe.algebra.Increment attribute) (seamm_mbe.catalog.MoleculeType attribute) (seamm_mbe.fragments.Fragment attribute) names (seamm_mbe.fragments.FragmentSet property) net_force (seamm_mbe.algebra.Increment attribute) (seamm_mbe.assemble.Labels attribute) O order (seamm_mbe.algebra.Increment attribute) (seamm_mbe.fragments.Fragment property) P per_body (seamm_mbe.algebra.Correction attribute) (seamm_mbe.assemble.Labels attribute) per_level (seamm_mbe.algebra.Correction attribute) (seamm_mbe.assemble.Labels attribute) periodic (seamm_mbe.system.System property) pressure (seamm_mbe.assemble.Labels attribute) pressure() (in module seamm_mbe.units) R reach() (seamm_mbe.selection.SelectionRules method) reference_energy (seamm_mbe.assemble.Labels attribute) reference_point() (seamm_mbe.system.System method) rule() (seamm_mbe.selection.SelectionRules method) RULES (in module seamm_mbe.selection) rules (seamm_mbe.selection.SelectionRules attribute) S seamm_mbe module seamm_mbe.algebra module seamm_mbe.assemble module seamm_mbe.catalog module seamm_mbe.elements module seamm_mbe.fragments module seamm_mbe.levels module seamm_mbe.selection module seamm_mbe.system module seamm_mbe.units module selected() (seamm_mbe.fragments.FragmentSet method) SelectionError SelectionRules (class in seamm_mbe.selection) shift() (seamm_mbe.system.System method) signature (seamm_mbe.catalog.MoleculeType attribute) signature() (in module seamm_mbe.catalog) slot_atoms (seamm_mbe.fragments.Fragment attribute) stress (seamm_mbe.assemble.Labels attribute) StructureError subfragments (seamm_mbe.fragments.Fragment attribute) symbols() (seamm_mbe.fragments.Fragment method) System (class in seamm_mbe.system) T tensor_from_virial() (in module seamm_mbe.units) to_seamm() (in module seamm_mbe.units) type (seamm_mbe.system.Molecule attribute) type_counts() (seamm_mbe.system.System method) V vasp_stress_to_virial() (in module seamm_mbe.units) virial (seamm_mbe.algebra.Correction attribute) (seamm_mbe.algebra.Increment attribute) (seamm_mbe.assemble.CellTerm attribute) (seamm_mbe.assemble.Labels attribute) virial_from_tensor() (in module seamm_mbe.units) volume (seamm_mbe.system.System property) W widths (seamm_mbe.system.System property) wl_labels() (in module seamm_mbe.catalog)