Index

A

analyze() (lammps_step.energy.Energy method) (lammps_step.lammps.LAMMPS method) (lammps_step.minimization.Minimization method) (lammps_step.nve.NVE method)

analyze_trajectory() (lammps_step.lammps.LAMMPS method) angle_table() (lammps_step.lammps.LAMMPS method)

B

box_to_cell() (lammps_step.lammps.LAMMPS static method)

C

canvas (lammps_step.tk_heat_flux.TkHeatFlux attribute) cell_to_box() (lammps_step.lammps.LAMMPS static method) create_dialog() (lammps_step.tk_custom.TkCustom method) (lammps_step.tk_energy.TkEnergy method) (lammps_step.tk_heat_flux.TkHeatFlux method) (lammps_step.tk_initialization.TkInitialization method) (lammps_step.tk_lammps.TkLAMMPS method) (lammps_step.tk_minimization.TkMinimization method) (lammps_step.tk_npt.TkNPT method) (lammps_step.tk_nve.TkNVE method) (lammps_step.tk_nvt.TkNVT method) (lammps_step.tk_velocities.TkVelocities method) create_node() (lammps_step.custom_step.CustomStep method) (lammps_step.energy_step.EnergyStep method) (lammps_step.heat_flux_step.HeatFluxStep method) (lammps_step.initialization_step.InitializationStep method) (lammps_step.lammps_step.LAMMPSStep method) (lammps_step.minimization_step.MinimizationStep method) (lammps_step.npt_step.NPTStep method) (lammps_step.nve_step.NVEStep method) (lammps_step.nvt_step.NVTStep method) (lammps_step.velocities_step.VelocitiesStep method)

create_parser() (lammps_step.lammps.LAMMPS method) create_tk_node() (lammps_step.custom_step.CustomStep method) (lammps_step.energy_step.EnergyStep method) (lammps_step.heat_flux_step.HeatFluxStep method) (lammps_step.initialization_step.InitializationStep method) (lammps_step.lammps_step.LAMMPSStep method) (lammps_step.minimization_step.MinimizationStep method) (lammps_step.npt_step.NPTStep method) (lammps_step.nve_step.NVEStep method) (lammps_step.nvt_step.NVTStep method) (lammps_step.velocities_step.VelocitiesStep method) Custom (class in lammps_step.custom) CustomParameters (class in lammps_step.custom_parameters) CustomStep (class in lammps_step.custom_step)

D

describe() (lammps_step.npt.NPT method) (lammps_step.nvt.NVT method) description() (lammps_step.custom_step.CustomStep method) (lammps_step.energy_step.EnergyStep method) (lammps_step.heat_flux_step.HeatFluxStep method) (lammps_step.initialization_step.InitializationStep method) (lammps_step.lammps_step.LAMMPSStep method) (lammps_step.minimization_step.MinimizationStep method) (lammps_step.npt_step.NPTStep method) (lammps_step.nve_step.NVEStep method) (lammps_step.nvt_step.NVTStep method) (lammps_step.velocities_step.VelocitiesStep method)

description_text() (lammps_step.custom.Custom method) (lammps_step.energy.Energy method) (lammps_step.heat_flux.HeatFlux method) (lammps_step.initialization.Initialization method) (lammps_step.lammps.LAMMPS method) (lammps_step.minimization.Minimization method) (lammps_step.npt.NPT method) (lammps_step.nve.NVE method) (lammps_step.nvt.NVT method) (lammps_step.velocities.Velocities method) dialog (lammps_step.tk_heat_flux.TkHeatFlux attribute) display_title (lammps_step.lammps.LAMMPS attribute) display_units (lammps_step.lammps.LAMMPS attribute)

E

eex (lammps_step.lammps.LAMMPS property) Energy (class in lammps_step.energy)

EnergyParameters (class in lammps_step.energy_parameters) EnergyStep (class in lammps_step.energy_step) exe_version() (lammps_step.installer.Installer method)

F

ff_form() (lammps_step.lammps.LAMMPS method) force_triclinic (lammps_step.lammps.LAMMPS property)

from_flowchart() (lammps_step.tk_lammps.TkLAMMPS method) from_lammps_units() (in module lammps_step.lammps_units)

G

general_cb() (lammps_step.tk_initialization.TkInitialization method) get_dump() (lammps_step.lammps.LAMMPS method) get_input() (lammps_step.custom.Custom method) (lammps_step.energy.Energy method) (lammps_step.heat_flux.HeatFlux method) (lammps_step.initialization.Initialization method) (lammps_step.minimization.Minimization method) (lammps_step.npt.NPT method) (lammps_step.nve.NVE method) (lammps_step.nvt.NVT method) (lammps_step.velocities.Velocities method)

get_lammps_unit_system() (in module lammps_step.lammps_units) get_pressure_text() (lammps_step.minimization.Minimization method) (lammps_step.npt.NPT method) git_revision (lammps_step.custom.Custom property) (lammps_step.energy.Energy property) (lammps_step.heat_flux.HeatFlux property) (lammps_step.initialization.Initialization property) (lammps_step.lammps.LAMMPS property) (lammps_step.velocities.Velocities property)

H

h (lammps_step.tk_heat_flux.TkHeatFlux attribute) handle_dialog() (lammps_step.tk_custom.TkCustom method) (lammps_step.tk_npt.TkNPT method) (lammps_step.tk_nve.TkNVE method) (lammps_step.tk_nvt.TkNVT method) have_dreiding_hbonds (lammps_step.lammps.LAMMPS property) header (lammps_step.custom.Custom property) (lammps_step.energy.Energy property) (lammps_step.heat_flux.HeatFlux property) (lammps_step.initialization.Initialization property) (lammps_step.velocities.Velocities property)

HeatFlux (class in lammps_step.heat_flux) HeatFluxParameters (class in lammps_step.heat_flux_parameters) HeatFluxStep (class in lammps_step.heat_flux_step)

I

Initialization (class in lammps_step.initialization) InitializationParameters (class in lammps_step.initialization_parameters)

InitializationStep (class in lammps_step.initialization_step) Installer (class in lammps_step.installer)

K

kspace_method_cb() (lammps_step.tk_initialization.TkInitialization method)

kspace_methods (lammps_step.initialization.Initialization property)

L

LAMMPS (class in lammps_step.lammps) lammps_step module lammps_step.custom module lammps_step.custom_parameters module lammps_step.custom_step module lammps_step.energy module lammps_step.energy_parameters module lammps_step.energy_step module lammps_step.heat_flux module lammps_step.heat_flux_parameters module lammps_step.heat_flux_step module lammps_step.initialization module lammps_step.initialization_parameters module lammps_step.initialization_step module lammps_step.installer module lammps_step.lammps module lammps_step.lammps_step module lammps_step.lammps_units module lammps_step.metadata module lammps_step.minimization module lammps_step.minimization_parameters module lammps_step.minimization_step module lammps_step.npt module

lammps_step.npt_parameters module lammps_step.npt_step module lammps_step.nve module lammps_step.nve_parameters module lammps_step.nve_step module lammps_step.nvt module lammps_step.nvt_parameters module lammps_step.nvt_step module lammps_step.tk_custom module lammps_step.tk_energy module lammps_step.tk_heat_flux module lammps_step.tk_initialization module lammps_step.tk_lammps module lammps_step.tk_minimization module lammps_step.tk_npt module lammps_step.tk_nve module lammps_step.tk_nvt module lammps_step.tk_velocities module lammps_step.velocities module lammps_step.velocities_parameters module lammps_step.velocities_step module lammps_units() (in module lammps_step.lammps_units) LAMMPSStep (class in lammps_step.lammps_step) logging_disabled() (in module lammps_step.lammps)

M

metadata (in module lammps_step.metadata) methods (lammps_step.npt.NPT attribute) Minimization (class in lammps_step.minimization) MinimizationParameters (class in lammps_step.minimization_parameters) MinimizationStep (class in lammps_step.minimization_step) model (lammps_step.energy.Energy property) module lammps_step lammps_step.custom lammps_step.custom_parameters lammps_step.custom_step lammps_step.energy lammps_step.energy_parameters lammps_step.energy_step lammps_step.heat_flux lammps_step.heat_flux_parameters lammps_step.heat_flux_step lammps_step.initialization lammps_step.initialization_parameters lammps_step.initialization_step lammps_step.installer lammps_step.lammps lammps_step.lammps_step lammps_step.lammps_units lammps_step.metadata lammps_step.minimization lammps_step.minimization_parameters lammps_step.minimization_step lammps_step.npt lammps_step.npt_parameters lammps_step.npt_step lammps_step.nve lammps_step.nve_parameters lammps_step.nve_step lammps_step.nvt lammps_step.nvt_parameters lammps_step.nvt_step lammps_step.tk_custom lammps_step.tk_energy lammps_step.tk_heat_flux lammps_step.tk_initialization lammps_step.tk_lammps lammps_step.tk_minimization lammps_step.tk_npt lammps_step.tk_nve lammps_step.tk_nvt lammps_step.tk_velocities lammps_step.velocities lammps_step.velocities_parameters lammps_step.velocities_step

my_description (lammps_step.custom_step.CustomStep attribute) (lammps_step.energy_step.EnergyStep attribute) (lammps_step.heat_flux_step.HeatFluxStep attribute) (lammps_step.initialization_step.InitializationStep attribute) (lammps_step.lammps_step.LAMMPSStep attribute) (lammps_step.minimization_step.MinimizationStep attribute) (lammps_step.npt_step.NPTStep attribute) (lammps_step.nve_step.NVEStep attribute) (lammps_step.nvt_step.NVTStep attribute) (lammps_step.velocities_step.VelocitiesStep attribute)

N

node (lammps_step.tk_heat_flux.TkHeatFlux attribute) node_class (lammps_step.tk_lammps.TkLAMMPS attribute) NPT (class in lammps_step.npt) NPT_Parameters (class in lammps_step.npt_parameters) NPTStep (class in lammps_step.npt_step)

NVE (class in lammps_step.nve) NVE_Parameters (class in lammps_step.nve_parameters) NVEStep (class in lammps_step.nve_step) NVT (class in lammps_step.nvt) NVT_Parameters (class in lammps_step.nvt_parameters) NVTStep (class in lammps_step.nvt_step)

O

OpenKIM_energy_expression() (lammps_step.initialization.Initialization method)

OpenKIM_input() (lammps_step.initialization.Initialization method) options (lammps_step.heat_flux.HeatFlux attribute)

P

parameters (lammps_step.custom_parameters.CustomParameters attribute) (lammps_step.energy_parameters.EnergyParameters attribute) (lammps_step.heat_flux.HeatFlux attribute) (lammps_step.heat_flux_parameters.HeatFluxParameters attribute) (lammps_step.initialization_parameters.InitializationParameters attribute) (lammps_step.minimization_parameters.MinimizationParameters attribute) (lammps_step.npt_parameters.NPT_Parameters attribute) (lammps_step.nve_parameters.NVE_Parameters attribute) (lammps_step.nvt_parameters.NVT_Parameters attribute) (lammps_step.velocities_parameters.VelocitiesParameters attribute)

parser (lammps_step.heat_flux.HeatFlux attribute) pline() (in module lammps_step.lammps) pvalue() (in module lammps_step.lammps) PyTorch_energy_expression() (lammps_step.initialization.Initialization method) PyTorch_input() (lammps_step.initialization.Initialization method)

R

read_dump() (lammps_step.lammps.LAMMPS method) reset_control_frame() (lammps_step.tk_nve.TkNVE method) reset_dialog() (lammps_step.tk_heat_flux.TkHeatFlux method) (lammps_step.tk_minimization.TkMinimization method) (lammps_step.tk_npt.TkNPT method) (lammps_step.tk_nve.TkNVE method) (lammps_step.tk_nvt.TkNVT method) (lammps_step.tk_velocities.TkVelocities method) reset_optimization() (lammps_step.tk_minimization.TkMinimization method) reset_pressure_frame() (lammps_step.tk_minimization.TkMinimization method) (lammps_step.tk_npt.TkNPT method) reset_stress_frame() (lammps_step.tk_minimization.TkMinimization method) (lammps_step.tk_npt.TkNPT method)

reset_temperature_frame() (lammps_step.tk_nvt.TkNVT method) reset_trajectory_frame() (lammps_step.tk_nve.TkNVE method) results (lammps_step.energy.Energy property) (lammps_step.lammps.LAMMPS property) right_click() (lammps_step.tk_custom.TkCustom method) (lammps_step.tk_energy.TkEnergy method) (lammps_step.tk_heat_flux.TkHeatFlux method) (lammps_step.tk_initialization.TkInitialization method) (lammps_step.tk_lammps.TkLAMMPS method) (lammps_step.tk_velocities.TkVelocities method) run() (lammps_step.lammps.LAMMPS method)

S

self (lammps_step.tk_heat_flux.TkHeatFlux attribute) set_id() (lammps_step.lammps.LAMMPS method) set_lammps_unit_system() (in module lammps_step.lammps_units)

shake_fix() (lammps_step.lammps.LAMMPS method) structure_data() (lammps_step.lammps.LAMMPS method) subflowchart (lammps_step.heat_flux.HeatFlux attribute)

T

timestep() (lammps_step.nve.NVE method) tk_flowchart (lammps_step.tk_heat_flux.TkHeatFlux attribute) TkCustom (class in lammps_step.tk_custom) TkEnergy (class in lammps_step.tk_energy) TkHeatFlux (class in lammps_step.tk_heat_flux) TkInitialization (class in lammps_step.tk_initialization) TkLAMMPS (class in lammps_step.tk_lammps)

TkMinimization (class in lammps_step.tk_minimization) TkNPT (class in lammps_step.tk_npt) TkNVE (class in lammps_step.tk_nve) TkNVT (class in lammps_step.tk_nvt) TkVelocities (class in lammps_step.tk_velocities) to_lammps_units() (in module lammps_step.lammps_units) trajectories (lammps_step.nve_parameters.NVE_Parameters attribute) trajectory_input() (lammps_step.nve.NVE method)

U

update_flowchart() (lammps_step.tk_lammps.TkLAMMPS method)

V

Velocities (class in lammps_step.velocities) VelocitiesParameters (class in lammps_step.velocities_parameters) VelocitiesStep (class in lammps_step.velocities_step) version (lammps_step.custom.Custom property) (lammps_step.energy.Energy property) (lammps_step.heat_flux.HeatFlux property) (lammps_step.initialization.Initialization property) (lammps_step.lammps.LAMMPS property) (lammps_step.velocities.Velocities property)

W

w (lammps_step.tk_heat_flux.TkHeatFlux attribute)

X

x (lammps_step.tk_heat_flux.TkHeatFlux attribute)

Y

y (lammps_step.tk_heat_flux.TkHeatFlux attribute)